Interface Use:
This BamQuery interface facilitates tumor antigen prioritization. The interface queries a list of user-defined MAPs in mTECs (8) and Blood DCs (19) samples, as these cells are proxies for tumor specificity and immunogenicity. This interface also incorporates a predictive logistic regression model to report the conferred probability that a MAP is immunogenic.
Entry requirements:
1. Query name (This name will be required to download your results).
2. List of MAPs (a maximum of 100 MAPs per run). BamQuery analyze MAPs ranging in length from 8 to 11 amino acids (aa).
3. The genome version selected is v26_88, as the samples were aligned using this genome reference.
4. Select the dbSNP database.