Interface Use:

This BamQuery interface facilitates tumor antigen prioritization. The interface queries a list of user-defined MAPs in mTECs and DCs samples, as these cells are proxies for tumor specificity and immunogenicity. This interface also incorporates a predictive logistic regression model to report the conferred probability that a MAP is immunogenic.

Entry requirements:
1. Query name (This name will be required to download your results).
2. List of MAPs (a maximum of 100 MAPs per run).
3. Select the genome version and the dbSNP database.

NewQuery
Set a name to identify your query. Keep this name in mind to retrieve your results later.
This value changes the threshold that is considered for comparing the expression levels of different tissues.
Default = 8.55 rphm (reads per hundred million).

Genome version supported : v26_88 / v33_99 / v38_104.

dbSNP supported : 149 / 151 / 155 / None.

Limited number of peptides = 100 per run.
BamQuery analyze MAPs ranging in length from 8 to 11 amino acids (aa).

Peptides example list:
YVHMVTHF
AAMLDTVVFK
...